Compilation of delft3d under centos 7 Can't open module file 'netcdf.mod' https://dlt-acc.firelay.cloud/c/message_boards/find_thread?p_l_id=3231581&threadId=3398438 2026-05-15T15:07:11Z 2026-05-15T15:07:11Z Adri Mourits https://dlt-acc.firelay.cloud/c/message_boards/find_message?p_l_id=3231581&messageId=3398946 2018-09-05T18:27:21Z 2018-09-05T18:27:21Z

<p>Hi Gary,</p> <p>Does binary &quot;/opt/mpich2-1.4.1-gcc-4.6.2/bin/mpif90&quot; exist?</p> <p>It is important that the mpich version you use is compiled with exactly the same compiler as you plan to use for Delft3D. It might be wise to download the mpich source code and compile it yourself, just to be sure.</p> <p>Regards,</p> <p>Adri</p>

Adri Mourits 2018-09-05T18:27:21Z Gary Gatling https://dlt-acc.firelay.cloud/c/message_boards/find_message?p_l_id=3231581&messageId=3398437 2018-08-08T02:07:17Z 2018-08-08T02:07:17Z

<p>Hello. I am trying to help a student who needs this software to work under centos 7. I know nothing about it.</p> <p> </p> <p>First try using</p> <p> </p> <p>./autogen.sh</p> <p>./configure</p> <p>make</p> <p> </p> <p>libtool: compile:  gfortran -DHAVE_CONFIG_H -I. -I../../../../.. -I../../../../../utils_lgpl/deltares_common/packages/deltares_common/src -I/include -DWITH_DELFTONLINE -g -O2 -ffree-line-length-none -cpp -c netcdf_utils.F90  -fPIC -o .libs/netcdf_utils.o<br /> Warning: Nonexistent include directory &quot;/include&quot;<br /> netcdf_utils.F90:33.4:</p> <p>use netcdf<br />     1<br /> Fatal Error: Can't open module file 'netcdf.mod' for reading at (1): No such file or directory<br /> make[6]: *** [netcdf_utils.lo] Error 1<br /> ...</p> <p> </p> <p>I have installed via yum: </p> <p>environment-modules-3.2.10-10.el7.x86_64<br /> openmpi-1.10.7-1.el7.x86_64<br /> openmpi-devel-1.10.7-1.el7.x86_64<br /> mpich-3.0-3.0.4-10.el7.x86_64<br /> hdf5-openmpi-1.8.12-10.el7.x86_64<br /> netcdf-fortran-4.2-16.el7.x86_64<br /> hdf5-mpich-1.8.12-10.el7.x86_64<br /> netcdf-mpich-4.3.3.1-5.el7.x86_64<br /> netcdf-openmpi-4.3.3.1-5.el7.x86_64<br /> hdf5-openmpi-devel-1.8.12-10.el7.x86_64<br /> netcdf-openmpi-devel-4.3.3.1-5.el7.x86_64<br /> mpich-3.0-devel-3.0.4-10.el7.x86_64<br /> hdf5-mpich-devel-1.8.12-10.el7.x86_64<br /> netcdf-mpich-devel-4.3.3.1-5.el7.x86_64<br /> netcdf-fortran-mpich-4.2-16.el7.x86_64<br /> netcdf-fortran-openmpi-4.2-16.el7.x86_64<br /> netcdf-fortran-openmpi-devel-4.2-16.el7.x86_64<br /> netcdf-fortran-mpich-devel-4.2-16.el7.x86_64<br /> netcdf-fortran-devel-4.2-16.el7.x86_64<br /> openmpi3-3.0.0-1.el7.x86_64<br /> openmpi3-devel-3.0.0-1.el7.x86_64<br />  </p> <p>But none of it helped.</p> <p> </p> <p>I tried downloading netcdf-4.6.1.tar.gz and built and installed it locally and set</p> <p>export PKG_CONFIG_PATH=/usr/local/lib/pkgconfig</p> <p> </p> <p>and</p> <p> </p> <p>export PKG_CONFIG_PATH=/usr/local/lib/pkgconfig/netcdf.pc</p> <p> </p> <p> </p> <p>But nothing helps. It always gives same error.</p> <p> </p> <p>second method attempt:</p> <p>./build.sh -gnu</p> <p> </p> <p>which sets bizarre things like</p> <p> </p> <p>export MPIFC=&quot;/opt/mpich2-1.4.1-gcc-4.6.2/bin/mpif90&quot; (which does not exist)</p> <p>20180807.200056 :: Running make ds-install &amp;&gt; logs/make.log<br /> 20180807.200056 :: Make fails!<br />  </p> <p>in logs/make.log</p> <p> <br /> /opt/mpich2-1.4.1-gcc-4.6.2/bin/mpif90   -DWITH_DELFTONLINE -O2  -ffree-line-length-none -cpp -c -o version_number.o  version_number.f90<br /> make[5]: /opt/mpich2-1.4.1-gcc-4.6.2/bin/mpif90: Command not found<br />  </p> <p>Starting to give up hope that it would even be possible to compile this software on a centos 7 machine.</p> <p> </p> <p>Does anyone know what she or I are doing wrong here? Has anyone succeeded without buying expensive intel compiler and just using gnu under centos 7 or RHEL 7?</p> <p> </p> <p>Thank you very much.</p> <p> </p> <p> </p>

Gary Gatling 2018-08-08T02:07:17Z